Package: OncoSubtype 1.0.0

Dadong Zhang

OncoSubtype: Predict Cancer Subtypes Based on TCGA Data using Machine Learning Method

Provide functionality for cancer subtyping using nearest centroids or machine learning methods based on TCGA data.

Authors:Dadong Zhang <[email protected]>

OncoSubtype_1.0.0.tar.gz
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OncoSubtype.pdf |OncoSubtype.html✨
OncoSubtype/json (API)

# Install 'OncoSubtype' in R:
install.packages('OncoSubtype', repos = c('https://dadongz.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/dadongz/oncosubtype/issues

Datasets:

On CRAN:

Conda:

3.70 score 1 stars 1 scripts 134 downloads 6 exports 106 dependencies

Last updated 1 years agofrom:a4a3d4ba0e. Checks:9 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 19 2025
R-4.5-winOKMar 19 2025
R-4.5-macOKMar 19 2025
R-4.5-linuxOKMar 19 2025
R-4.4-winOKMar 19 2025
R-4.4-macOKMar 19 2025
R-4.4-linuxOKMar 19 2025
R-4.3-winOKMar 19 2025
R-4.3-macOKMar 19 2025

Exports:centroids_subtypeget_hvgget_median_centeredload_dataset_from_githubml_subtypePlotHeat

Dependencies:abindaskpassBiobaseBiocGenericscaretclasscliclockcodetoolscolorspacecpp11crayoncurldata.tableDelayedArraydiagramdigestdplyre1071fansifarverforeachfuturefuture.applygenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2globalsgluegowergtablehardhathttripredIRangesisobanditeratorsjsonliteKernSmoothlabelinglatticelavalifecyclelimmalistenvlubridatemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmimeModelMetricsmunsellnlmennetnumDerivopensslparallellypheatmappillarpkgconfigplyrpROCprodlimprogressrproxypurrrR6randomForestrbibutilsRColorBrewerRcppRdpackrecipesreshape2rlangrpartS4ArraysS4VectorsscalesshapeSparseArraysparsevctrsSQUAREMstatmodstringistringrSummarizedExperimentsurvivalsystibbletidyrtidyselecttimechangetimeDatetzdbUCSC.utilsutf8vctrsviridisLitewithrXVector

Predict cancer subtypes using NCC or machine learning methods based on TCGA data

Dadong Zhang

Rendered fromOncoSubtype.Rmdusingknitr::rmarkdownon Mar 19 2025.

Last update: 2024-03-22
Started: 2024-03-22